Graphlytic depends on Neo4j so if you want to stop applications (Neo4j and Graphlytic) manually we strongly advise to stop Graphlytic first and only after that to stop Neo4j.
Open the Services manager window (see the picture below)
Stop the Graphlytic Service
Depending on how neo4j is installed see Neo4j Installation manual on how to stop Neo4j. If Neo4j was started as a service then
open windows console
change directory do <NEO4J_HOME>\bin directory
execute neo4j.bat stop